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GrainGenes Marker Report: POPA2_1124

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Locus	POPA2_1124
Type	SNP
Synonym	Other name 11_21124 BOPA1_11_21124 BOPA1_6593-185 Synonym 11_21124
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 54.9 Hordeum-OPA-2009-6H 55.65 Hordeum-OPA123-2008-6H 55.65 Hordeum-OPAConsensus-2011-6H 59.25
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3909 i_11_21124
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1124 Marker name in barley OPA1 = 11_21124 Original SNP name = 6593-185 Most representative HarvEST:Barley Assembly #32 Unigene = 6593 Most representative HarvEST:Barley Assembly #35 Unigene = 3909 HarvEST Unigene 35 Probe Set = Contig8737_at Unigene 35 Rice Locus = LOC_Os02g33730 Description for best rice BLAST hit to Unigene 35 member = ubiquinol-cytochrome C reductase hinge protein, expressed; E value = 1E-34 Marker name in barley Pilot OPA2 = 2_1124 Description for best rice BLAST hit to Unigene 35 member = protein ubiquinol-cytochrome C reductase hinge protein, expressed; E value = 1E-34 BLAST hit in the rice genome = ubiquinol-cytochrome C reductase hinge protein, expressed
Probe for Locus	HAR35_3909
Locus	POPA2_1124
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare