Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1135

[Submit comment/correction]

Locus	POPA2_1135
Type	SNP
Synonym	Other name 12_21135 BOPA2_12_21135 Synonym 12_21135
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_3302 i_12_21135
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1135 Marker name in barley OPA1 = 12_21135 Original SNP name = 6736-548 Most representative HarvEST:Barley Assembly #32 Unigene = 6736 Most representative HarvEST:Barley Assembly #35 Unigene = 3302 HarvEST Unigene 35 Probe Set = Contig8996_s_at; Contig8997_at Unigene 35 Rice Locus = LOC_Os03g62030 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-34 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_3302
Locus	POPA1_0870 POPA2_1135