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GrainGenes Marker Report: POPA2_1136

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Locus	POPA2_1136
Type	SNP
Synonym	Other name 11_21136 BOPA1_11_21136 BOPA1_6752-1013 Synonym 11_21136
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 88.74 Hordeum-OPA123-2008-2H 88.74 Hordeum-OPAConsensus-2011-2H 101.3
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17743 i_11_21136
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1136 Marker name in barley OPA1 = 11_21136 Original SNP name = 6752-1013 Most representative HarvEST:Barley Assembly #32 Unigene = 6752 Most representative HarvEST:Barley Assembly #35 Unigene = 17743 HarvEST Unigene 35 Probe Set = Contig8908_at Unigene 35 Rice Locus = LOC_Os04g48770 Description for best rice BLAST hit to Unigene 35 member = ubiquitin fusion degradation protein 1, putative, expressed; E value = 1E-150 Marker name in barley Pilot OPA2 = 2_1136 Description for best rice BLAST hit to Unigene 35 member = protein ubiquitin fusion degradation protein 1, putative, expressed; E value = 1E-150 BLAST hit in the rice genome = ubiquitin fusion degradation protein 1, putative, expressed
Probe for Locus	HAR35_17743
Locus	POPA2_1136
Synonym	Synonym BCD445
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare