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GrainGenes Marker Report: POPA2_1137

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Locus	POPA2_1137
Type	SNP
Synonym	Other name 12_21137 BOPA2_12_21137 Synonym 12_21137
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 50.4 Hordeum-OPA123-2008-4H 50.4 Hordeum-OPAConsensus-2011-4H 57.54 Hordeum-OWB-OPA2008-4H 52.267
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2439 i_12_21137
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1137 Marker name in barley OPA1 = 12_21137 Original SNP name = 6755-407 Most representative HarvEST:Barley Assembly #32 Unigene = 6755 Most representative HarvEST:Barley Assembly #35 Unigene = 2439 HarvEST Unigene 35 Probe Set = Contig9314_at Unigene 35 Rice Locus = LOC_Os03g18810 Marker name in barley Pilot OPA2 = 2_1137 Marker name in barley OPA2 = 12_21137 Original SNP name = U32_5552_250 Description for best rice BLAST hit to Unigene 35 member = protein transaminase/ transferase, transferring nitrogenous groups, putative, expressed; E value = 0 BLAST hit in the rice genome = transaminase/ transferase, transferring nitrogenous groups, putative, expressed
Probe for Locus	HAR35_2439
Locus	POPA2_1137 POPA3_0684
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare