GrainGenes Marker Report: POPA2_1139
Locus
POPA2_1139
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 88.8 Hordeum-OPA-2009-5H 110.26 Hordeum-OPA123-2008-5H 110.26 Hordeum-OPAConsensus-2011-5H 103.01
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_3800
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1139 Most representative HarvEST:Barley Assembly #32 Unigene = 6765 Most representative HarvEST:Barley Assembly #35 Unigene = 3800 HarvEST Unigene 35 Probe Set = Contig8868_at; Contig8869_at; Contig8869_s_at Unigene 35 Rice Locus = LOC_Os09g35920 Description for best rice BLAST hit to Unigene 35 member = mediator complex subunit 10 CG5057-PA, putative, expressed; E value = 2E-82 Marker name in barley Pilot OPA2 = 2_1139 Original SNP name = 6765-356 HarvEST Unigene 35 Probe Set = Contig8868_at, Contig8869_at, Contig8869_s_at Description for best rice BLAST hit to Unigene 35 member = protein mediator complex subunit 10 CG5057-PA, putative, expressed; E value = 2E-82 BLAST hit in the rice genome = mediator complex subunit 10 CG5057-PA, putative, expressed
Probe for Locus
HAR35_3800
Locus
POPA1_0871 POPA2_1139
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1139
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