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GrainGenes Marker Report: POPA2_1140

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Locus	POPA2_1140
Type	SNP
Synonym	Other name 11_21140 BOPA1_11_21140 BOPA1_677-411 Synonym 11_21140
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 119.1 Hordeum-OPA-2009-1H 126.01 Hordeum-OPA123-2008-1H 126.01 Hordeum-OPAConsensus-2011-1H 127.26
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_13742 i_11_21140
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1140 Marker name in barley OPA1 = 11_21140 Original SNP name = 677-411 Most representative HarvEST:Barley Assembly #32 Unigene = 677 Most representative HarvEST:Barley Assembly #35 Unigene = 13742 HarvEST Unigene 35 Probe Set = Contig1041_x_at; Contig1079_x_at Unigene 35 Rice Locus = LOC_Os01g22490 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein S27a, putative, expressed; E value = 9E-86 Marker name in barley Pilot OPA2 = 2_1140 HarvEST Unigene 35 Probe Set = Contig1041_x_at, Contig1079_x_at Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein S27a, putative, expressed; E value = 9E-86 BLAST hit in the rice genome = 40S ribosomal protein S27a, putative, expressed
Probe for Locus	HAR35_13742
Locus	POPA2_1140 POPA1_0872
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare