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GrainGenes Marker Report: POPA2_1142

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Locus	POPA2_1142
Type	SNP
Synonym	Other name 11_21142 BOPA1_11_21142 BOPA1_678-310 Synonym 11_21142
Chromosome	2H
Chromosome Arm	2HL
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_13754 i_11_21142
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1142 Marker name in barley OPA1 = 11_21142 Original SNP name = 678-310 Most representative HarvEST:Barley Assembly #32 Unigene = 678 Most representative HarvEST:Barley Assembly #35 Unigene = 13754 HarvEST Unigene 35 Probe Set = Contig1071_s_at Unigene 35 Rice Locus = LOC_Os06g21270 Description for best rice BLAST hit to Unigene 35 member = glycine-rich cell wall structural protein precursor, putative, expressed; E value = 7E-32 BLAST hit in the rice genome = glycine-rich cell wall structural protein precursor, putative, expressed
Probe for Locus	HAR35_13754
Locus	POPA2_1142