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GrainGenes Marker Report: POPA2_1148

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Locus	POPA2_1148
Type	SNP
Synonym	Synonym 11_21148
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 57.98 Hordeum-OPA123-2008-5H 57.98 Hordeum-OPAConsensus-2011-5H 50.53
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_18171
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1148 Marker name in barley OPA1 = 11_21148 Original SNP name = 6820-586 Most representative HarvEST:Barley Assembly #32 Unigene = 6820 Most representative HarvEST:Barley Assembly #35 Unigene = 18171 HarvEST Unigene 35 Probe Set = Contig9124_at Unigene 35 Rice Locus = LOC_Os09g01960 Description for best rice BLAST hit to Unigene 35 member = sucrose responsive element binding protein, putative, expressed; E value = 3E-40 Marker name in barley Pilot OPA2 = 2_1148 Description for best rice BLAST hit to Unigene 35 member = protein sucrose responsive element binding protein, putative, expressed; E value = 3E-40 BLAST hit in the rice genome = sucrose responsive element binding protein, putative, expressed
Probe for Locus	HAR35_18171
Locus	POPA2_1148
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare