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GrainGenes Marker Report: POPA2_1155

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Locus	POPA2_1155
Type	SNP
Synonym	Other name 11_21155 BOPA1_11_21155 BOPA1_6851-867 Synonym 11_21155
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 165.8 Hordeum-OPA-2009-5H 187.38 Hordeum-OPA123-2008-5H 187.38 Hordeum-OPAConsensus-2011-5H 182.53
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3841 i_11_21155
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1155 Marker name in barley OPA1 = 11_21155 Original SNP name = 6851-867 Most representative HarvEST:Barley Assembly #32 Unigene = 6851 Most representative HarvEST:Barley Assembly #35 Unigene = 3841 HarvEST Unigene 35 Probe Set = Contig8876_at; Contig8877_at; Contig8877_s_at Unigene 35 Rice Locus = LOC_Os03g63110 Description for best rice BLAST hit to Unigene 35 member = B-cell receptor-associated protein 31-like containing protein, expressed; E value = 1E-100 Marker name in barley Pilot OPA2 = 2_1155 HarvEST Unigene 35 Probe Set = Contig8876_at, Contig8877_at, Contig8877_s_at Description for best rice BLAST hit to Unigene 35 member = protein B-cell receptor-associated protein 31-like containing protein, expressed; E value = 1E-100 BLAST hit in the rice genome = B-cell receptor-associated protein 31-like containing protein, expressed
Probe for Locus	HAR35_3841
Locus	POPA2_1155
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare