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GrainGenes Marker Report: POPA2_1158

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Locus	POPA2_1158
Type	SNP
Synonym	Other name 11_21158 BOPA1_11_21158 BOPA1_6854-309 Synonym 11_21158
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 53.95 Hordeum-OPA123-2008-6H 53.95 Hordeum-OPAConsensus-2011-6H 57.83 Hordeum-OWB-OPA2008-6H 66.332
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_4175 i_11_21158
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1158 Marker name in barley OPA1 = 11_21158 Original SNP name = 6854-309 Most representative HarvEST:Barley Assembly #32 Unigene = 6854 Most representative HarvEST:Barley Assembly #35 Unigene = 4175 HarvEST Unigene 35 Probe Set = Contig22779_s_at; Contig9096_at Unigene 35 Rice Locus = LOC_Os02g07600 Description for best rice BLAST hit to Unigene 35 member = low-molecular-weight cysteine-rich protein LCR70 precursor, putative; E value = 0.000000000000000003 Marker name in barley Pilot OPA2 = 2_1158 HarvEST Unigene 35 Probe Set = Contig22779_s_at, Contig9096_at Description for best rice BLAST hit to Unigene 35 member = protein low-molecular-weight cysteine-rich protein LCR70 precursor, putative; E value = 0.000000000000000003 BLAST hit in the rice genome = low-molecular-weight cysteine-rich protein LCR70 precursor, putative
Probe for Locus	HAR35_4175
Locus	POPA2_1158
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare