Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1168

[Submit comment/correction]

Locus	POPA2_1168
Type	SNP
Synonym	Other name 11_21168 BOPA1_11_21168 BOPA1_6913-1235 Synonym 11_21168
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 109.56 Hordeum-OPA123-2008-5H 109.56 Hordeum-OPAConsensus-2011-5H 98.2
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18288 i_11_21168
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1168 Marker name in barley OPA1 = 11_21168 Original SNP name = 6913-1235 Most representative HarvEST:Barley Assembly #32 Unigene = 6913 Most representative HarvEST:Barley Assembly #35 Unigene = 18288 HarvEST Unigene 35 Probe Set = Contig9219_at Unigene 35 Rice Locus = LOC_Os10g01134 Description for best rice BLAST hit to Unigene 35 member = serine carboxypeptidase 1 precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1168 Description for best rice BLAST hit to Unigene 35 member = protein serine carboxypeptidase 1 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = serine carboxypeptidase 1 precursor, putative, expressed
Probe for Locus	HAR35_18288
Locus	POPA2_1168
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare