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GrainGenes Marker Report: POPA2_1172

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Locus	POPA2_1172
Type	SNP
Synonym	Other name 12_21172 BOPA2_12_21172 Synonym 12_21172
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 121.12 Hordeum-OPA123-2008-1H 121.12 Hordeum-OPAConsensus-2011-1H 121.56 Hordeum-OWB-OPA2008-1H 134.288
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_4012 i_12_21172
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_1172 Marker name in barley OPA1 = 12_21172 Original SNP name = 6937-609 Most representative HarvEST:Barley Assembly #32 Unigene = 6937 Most representative HarvEST:Barley Assembly #35 Unigene = 4012 HarvEST Unigene 35 Probe Set = Contig9342_at; Contig9343_s_at Unigene 35 Rice Locus = LOC_Os05g48590 Description for best rice BLAST hit to Unigene 35 member = OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed; E value = 1E-102 Marker name in barley Pilot OPA2 = 2_1172 Marker name in barley OPA2 = 12_21172 HarvEST Unigene 35 Probe Set = Contig9342_at, Contig9343_s_at Description for best rice BLAST hit to Unigene 35 member = protein OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed; E value = 1E-102 BLAST hit in the rice genome = OsIAA19 - Auxin-responsive Aux/IAA gene family member, expressed
Probe for Locus	HAR35_4012
Locus	POPA2_1172
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare