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GrainGenes Marker Report: POPA2_1177

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Locus	POPA2_1177
Type	SNP
Synonym	Other name 11_21177 BOPA1_11_21177 BOPA1_6970-462 Synonym 11_21177
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 122.6 Hordeum-OPA-2009-5H 132.63 Hordeum-OPA123-2008-5H 132.63 Hordeum-OPAConsensus-2011-5H 125.09
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17677 i_11_21177
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1177 Marker name in barley OPA1 = 11_21177 Original SNP name = 6970-462 Most representative HarvEST:Barley Assembly #32 Unigene = 6970 Most representative HarvEST:Barley Assembly #35 Unigene = 17677 HarvEST Unigene 35 Probe Set = Contig9107_at Unigene 35 Rice Locus = LOC_Os03g53310 Description for best rice BLAST hit to Unigene 35 member = suppressor/enhancer of lin-12 protein 9 precursor, putative, expressed; E value = 1E-111 Marker name in barley Pilot OPA2 = 2_1177 Description for best rice BLAST hit to Unigene 35 member = protein suppressor/enhancer of lin-12 protein 9 precursor, putative, expressed; E value = 1E-111 BLAST hit in the rice genome = suppressor/enhancer of lin-12 protein 9 precursor, putative, expressed
Probe for Locus	HAR35_17677
Locus	POPA2_1177
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare