Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1189

[Submit comment/correction]

Locus	POPA2_1189
Type	SNP
Synonym	Other name 11_21189 BOPA1_11_21189 BOPA1_7045-950 Synonym 11_21189
Chromosome	3H
Chromosome Arm	3HS
Map	Barley, 2012 9KSNP 3H 46 Hordeum-OPA-2009-3H 48.63 Hordeum-OPA123-2008-3H 48.63 Hordeum-OPAConsensus-2011-3H 52.17 Hordeum-OWB-OPA2008-3H 54.231
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3548 i_11_21189
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1189 Marker name in barley OPA1 = 11_21189 Original SNP name = 7045-950 Most representative HarvEST:Barley Assembly #32 Unigene = 7045 Most representative HarvEST:Barley Assembly #35 Unigene = 3548 HarvEST Unigene 35 Probe Set = Contig9396_at Unigene 35 Rice Locus = LOC_Os01g08830 Description for best rice BLAST hit to Unigene 35 member = F-box domain containing protein, expressed; E value = 1E-147 Marker name in barley Pilot OPA2 = 2_1189 Original SNP name = U32_8184_522 Description for best rice BLAST hit to Unigene 35 member = protein F-box domain containing protein, expressed; E value = 1E-147 BLAST hit in the rice genome = F-box domain containing protein, expressed
Probe for Locus	HAR35_3548
Locus	POPA2_1189
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare