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GrainGenes Marker Report: POPA2_1192

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Locus	POPA2_1192
Type	SNP
Synonym	Synonym 11_21192
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 88.23 Hordeum-OPA123-2008-1H 88.23 Hordeum-OPAConsensus-2011-1H 89.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_17780
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1192 Marker name in barley OPA1 = 11_21192 Original SNP name = 7083-717 Most representative HarvEST:Barley Assembly #32 Unigene = 7083 Most representative HarvEST:Barley Assembly #35 Unigene = 17780 HarvEST Unigene 35 Probe Set = Contig9317_at Unigene 35 Rice Locus = LOC_Os05g38610 Description for best rice BLAST hit to Unigene 35 member = coatomer subunit zeta-1, putative, expressed; E value = 4E-88 Marker name in barley Pilot OPA2 = 2_1192 Description for best rice BLAST hit to Unigene 35 member = protein coatomer subunit zeta-1, putative, expressed; E value = 4E-88 BLAST hit in the rice genome = coatomer subunit zeta-1, putative, expressed
Probe for Locus	HAR35_17780
Locus	POPA2_1192
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare