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GrainGenes Marker Report: POPA2_1203

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Locus	POPA2_1203
Type	SNP
Synonym	Other name 11_21203 BOPA1_11_21203 BOPA1_7167-466 Synonym 11_21203
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 119.2 Hordeum-OPA-2009-5H 129.41 Hordeum-OPA123-2008-5H 129.41 Hordeum-OPAConsensus-2011-5H 121.67
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4042 i_11_21203
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1203 Marker name in barley OPA1 = 11_21203 Original SNP name = 7167-466 Most representative HarvEST:Barley Assembly #32 Unigene = 7167 Most representative HarvEST:Barley Assembly #35 Unigene = 4042 HarvEST Unigene 35 Probe Set = Contig9254_at Unigene 35 Rice Locus = LOC_Os03g44310 Description for best rice BLAST hit to Unigene 35 member = translation initiation factor eIF-2B delta subunit, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1203 Description for best rice BLAST hit to Unigene 35 member = protein translation initiation factor eIF-2B delta subunit, putative, expressed; E value = 0 BLAST hit in the rice genome = translation initiation factor eIF-2B delta subunit, putative, expressed
Probe for Locus	HAR35_4042
Locus	POPA2_1203
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare