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GrainGenes Marker Report: POPA2_1205

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Locus	POPA2_1205
Type	SNP
Synonym	Other name 11_21205 BOPA1_11_21205 BOPA1_7187-382 Synonym 11_21205
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 71.56 Hordeum-OPA123-2008-2H 71.56 Hordeum-OPAConsensus-2011-2H 82.98
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16494 i_11_21205
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1205 Marker name in barley OPA1 = 11_21205 Original SNP name = 7187-382 Most representative HarvEST:Barley Assembly #32 Unigene = 7187 Most representative HarvEST:Barley Assembly #35 Unigene = 16494 HarvEST Unigene 35 Probe Set = Contig9802_at; Contig9802_s_at Unigene 35 Rice Locus = LOC_Os04g41920 Description for best rice BLAST hit to Unigene 35 member = CBF1 interacting corepressor, putative, expressed; E value = 2E-52 Marker name in barley Pilot OPA2 = 2_1205 HarvEST Unigene 35 Probe Set = Contig9802_at, Contig9802_s_at Description for best rice BLAST hit to Unigene 35 member = protein CBF1 interacting corepressor, putative, expressed; E value = 2E-52 BLAST hit in the rice genome = CBF1 interacting corepressor, putative, expressed
Probe for Locus	HAR35_16494
Locus	POPA2_1205
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare