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GrainGenes Marker Report: POPA2_1207

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Locus	POPA2_1207
Type	SNP
Synonym	Other name 11_21207 BOPA1_11_21207 BOPA1_7207-696 Synonym 11_21207
Chromosome	5H
Chromosome Arm	5HS
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_3939 i_11_21207
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_1207 Marker name in barley OPA1 = 11_21207 Original SNP name = 7207-696 Most representative HarvEST:Barley Assembly #32 Unigene = 7207 Most representative HarvEST:Barley Assembly #35 Unigene = 3939 HarvEST Unigene 35 Probe Set = Contig9730_at; EBes01_SQ002_A24_s_at Unigene 35 Rice Locus = LOC_Os12g41930 Description for best rice BLAST hit to Unigene 35 member = SRP40, C-terminal domain containing protein, expressed; E value = 3E-77 BLAST hit in the rice genome = SRP40, C-terminal domain containing protein, expressed
Probe for Locus	HAR35_3939
Locus	POPA2_1207