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GrainGenes Marker Report: POPA2_1217

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Locus	POPA2_1217
Type	SNP
Synonym	Other name 11_21217 BOPA1_11_21217 BOPA1_7284-710 Synonym 11_21217
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 49.6 Hordeum-OPA-2009-1H 54.73 Hordeum-OPA123-2008-1H 54.73 Hordeum-OPAConsensus-2011-1H 48.29 Hordeum-OWB-OPA2008-1H 60.999
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3566 i_11_21217
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1217 Marker name in barley OPA1 = 11_21217 Original SNP name = 7284-710 Most representative HarvEST:Barley Assembly #32 Unigene = 7284 Most representative HarvEST:Barley Assembly #35 Unigene = 3566 HarvEST Unigene 35 Probe Set = Contig9795_at Unigene 35 Rice Locus = LOC_Os10g42780 Description for best rice BLAST hit to Unigene 35 member = lrgB-like family protein, expressed; E value = 1E-167 Marker name in barley Pilot OPA2 = 2_1217 Description for best rice BLAST hit to Unigene 35 member = protein lrgB-like family protein, expressed; E value = 1E-167 BLAST hit in the rice genome = lrgB-like family protein, expressed
Probe for Locus	HAR35_3566
Locus	POPA2_1217
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare