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GrainGenes Marker Report: POPA2_1221

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Locus	POPA2_1221
Type	SNP
Synonym	Other name 11_21221 BOPA1_11_21221 BOPA1_7310-996 Synonym 11_21221
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 9.33 Hordeum-OPA123-2008-5H 9.33 Hordeum-OPAConsensus-2011-5H 6.36 Hordeum-OWB-OPA2008-5H 11.171
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_4141 i_11_21221
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1221 Marker name in barley OPA1 = 11_21221 Original SNP name = 7310-996 Most representative HarvEST:Barley Assembly #32 Unigene = 7310 Most representative HarvEST:Barley Assembly #35 Unigene = 4141 HarvEST Unigene 35 Probe Set = Contig9631_at Unigene 35 Rice Locus = LOC_Os12g43950 Description for best rice BLAST hit to Unigene 35 member = BEL1-related homeotic protein 30, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1221 Description for best rice BLAST hit to Unigene 35 member = protein BEL1-related homeotic protein 30, putative, expressed; E value = 0 BLAST hit in the rice genome = BEL1-related homeotic protein 30, putative, expressed
Probe for Locus	HAR35_4141
Locus	POPA2_1221
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare