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GrainGenes Marker Report: POPA2_1224

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Locus	POPA2_1224
Type	SNP
Synonym	Other name 11_21224 BOPA1_11_21224 BOPA1_7361-937 Synonym 11_21224
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 77.89 Hordeum-OPA123-2008-6H 77.89 Hordeum-OPAConsensus-2011-6H 86.96
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4347 i_11_21224
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1224 Marker name in barley OPA1 = 11_21224 Original SNP name = 7361-937 Most representative HarvEST:Barley Assembly #32 Unigene = 7361 Most representative HarvEST:Barley Assembly #35 Unigene = 4347 HarvEST Unigene 35 Probe Set = Contig9517_at; rbags21b16_s_at Unigene 35 Rice Locus = LOC_Os02g50880 Description for best rice BLAST hit to Unigene 35 member = protease Do-like 9, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1224 HarvEST Unigene 35 Probe Set = Contig9517_at, rbags21b16_s_at Description for best rice BLAST hit to Unigene 35 member = protein protease Do-like 9, putative, expressed; E value = 0 BLAST hit in the rice genome = protease Do-like 9, putative, expressed
Probe for Locus	HAR35_4347
Locus	POPA2_1224
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare