GrainGenes Marker Report: POPA2_1230
Locus
POPA2_1230
Type
SNP
Chromosome
6H
Chromosome Arm
6HS
Map
Barley-Core-2014_6H 1.08 Hordeum-OPA-2009-6H 0.67 Hordeum-OPA123-2008-6H 0.67 Hordeum-OPAConsensus-2011-6H 2.84
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_3488
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1230 Most representative HarvEST:Barley Assembly #32 Unigene = 7402 Most representative HarvEST:Barley Assembly #35 Unigene = 3488 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os02g01240 Description for best rice BLAST hit to Unigene 35 member = ankyrin-3, putative, expressed; E value = 3E-20 Marker name in barley Pilot OPA2 = 2_1230 Original SNP name = 7402-214 Description for best rice BLAST hit to Unigene 35 member = protein ankyrin-3, putative, expressed; E value = 3E-20 BLAST hit in the rice genome = ankyrin-3, putative, expressed
Probe for Locus
HAR35_3488
Locus
POPA2_1230
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1230
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