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GrainGenes Marker Report: POPA2_1232

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Locus	POPA2_1232
Type	SNP
Chromosome	7H
Chromosome Arm	7HS
Map	Barley-Core-2014_7H 51.91 Hordeum-OPA-2009-7H 49.68 Hordeum-OPA123-2008-7H 49.68 Hordeum-OPAConsensus-2011-7H 44.12
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_3983
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1232 Most representative HarvEST:Barley Assembly #32 Unigene = 7427 Most representative HarvEST:Barley Assembly #35 Unigene = 3983 HarvEST Unigene 35 Probe Set = Contig9696_s_at Unigene 35 Rice Locus = LOC_Os03g62370 Description for best rice BLAST hit to Unigene 35 member = WD40-like Beta Propeller Repeat family protein, expressed; E value = 1E-120 Marker name in barley Pilot OPA2 = 2_1232 Original SNP name = 7427-822 Description for best rice BLAST hit to Unigene 35 member = protein WD40-like Beta Propeller Repeat family protein, expressed; E value = 1E-120 BLAST hit in the rice genome = WD40-like Beta Propeller Repeat family protein, expressed
Probe for Locus	HAR35_3983
Locus	POPA2_1232
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare