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GrainGenes Marker Report: POPA2_1233

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Locus	POPA2_1233
Type	SNP
Chromosome	1H
Chromosome Arm	1HS
Map	Barley-Core-2014_1H 31.91 Hordeum-OPA-2009-1H 31.15 Hordeum-OPA123-2008-1H 31.15 Hordeum-OPAConsensus-2011-1H 25.3
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_18346
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1233 Most representative HarvEST:Barley Assembly #32 Unigene = 7434 Most representative HarvEST:Barley Assembly #35 Unigene = 18346 HarvEST Unigene 35 Probe Set = Contig9719_at Unigene 35 Rice Locus = LOC_Os11g42420 Description for best rice BLAST hit to Unigene 35 member = nuclear pore protein 84 / 107 containing protein, expressed; E value = 5E-81 Marker name in barley Pilot OPA2 = 2_1233 Original SNP name = 7434-820 Description for best rice BLAST hit to Unigene 35 member = protein nuclear pore protein 84 / 107 containing protein, expressed; E value = 5E-81 BLAST hit in the rice genome = nuclear pore protein 84 / 107 containing protein, expressed
Probe for Locus	HAR35_18346
Locus	POPA2_1233
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare