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GrainGenes Marker Report: POPA2_1241

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Locus	POPA2_1241
Type	SNP
Synonym	Other name 11_21241 BOPA1_11_21241 BOPA1_7523-440 Synonym 11_21241
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 125.8 Hordeum-OPA-2009-5H 137.16 Hordeum-OPA123-2008-5H 137.16 Hordeum-OPAConsensus-2011-5H 131.64
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17822 i_11_21241
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_1241 Marker name in barley OPA1 = 11_21241 Original SNP name = 7523-440 Most representative HarvEST:Barley Assembly #32 Unigene = 7523 Most representative HarvEST:Barley Assembly #35 Unigene = 17822 HarvEST Unigene 35 Probe Set = Contig10013_at; Contig10013_s_at; Contig10014_at Unigene 35 Rice Locus = LOC_Os03g54900 Description for best rice BLAST hit to Unigene 35 member = phytosulfokine receptor precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1241 Original SNP name = SCRI_AY750993_SNP2_03 HarvEST Unigene 35 Probe Set = Contig10013_at, Contig10013_s_at, Contig10014_at Description for best rice BLAST hit to Unigene 35 member = protein phytosulfokine receptor precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = phytosulfokine receptor precursor, putative, expressed
Probe for Locus	HAR35_17822
Locus	POPA2_1241
Synonym	Synonym BCD1427
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare