GrainGenes Marker Report: POPA2_1243
Locus
POPA2_1243
Type
SNP
Synonym
Other name 11_21243 BOPA1_11_21243 BOPA1_7550-562 Synonym 11_21243
Chromosome
4H
Chromosome Arm
4HL
Map
Barley, 2012 9KSNP 4H 97.6 Hordeum-OPA-2009-4H 97.06 Hordeum-OPA123-2008-4H 97.06 Hordeum-OPAConsensus-2011-4H 107.68
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3821 i_11_21243
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1243 Marker name in barley OPA1 = 11_21243 Original SNP name = 7550-562 Most representative HarvEST:Barley Assembly #32 Unigene = 7550 Most representative HarvEST:Barley Assembly #35 Unigene = 3821 HarvEST Unigene 35 Probe Set = Contig9944_at; Contig9944_s_at; Contig9946_at Unigene 35 Rice Locus = LOC_Os03g04240 Marker name in barley Pilot OPA2 = 2_1243 HarvEST Unigene 35 Probe Set = Contig9944_at, Contig9944_s_at, Contig9946_at Description for best rice BLAST hit to Unigene 35 member = protein glutathione S-transferase, putative, expressed; E value = 1E-113 BLAST hit in the rice genome = glutathione S-transferase, putative, expressed
Probe for Locus
HAR35_3821
Locus
POPA2_1243
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1243
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