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GrainGenes Marker Report: POPA2_1253

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Locus	POPA2_1253
Type	SNP
Synonym	Synonym 11_21253
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 43.14 Hordeum-OPA123-2008-5H 43.14 Hordeum-OPAConsensus-2011-5H 36.72
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_4046
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_1253 Marker name in barley OPA1 = 11_21253 Original SNP name = 7681-229 Most representative HarvEST:Barley Assembly #32 Unigene = 7681 Most representative HarvEST:Barley Assembly #35 Unigene = 4046 HarvEST Unigene 35 Probe Set = Contig10107_at; Contig22271_at Unigene 35 Rice Locus = LOC_Os12g42140 Description for best rice BLAST hit to Unigene 35 member = tuftelin-interacting protein 11, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_1253 Original SNP name = U32_7514_744 HarvEST Unigene 35 Probe Set = Contig10107_at, Contig22271_at Description for best rice BLAST hit to Unigene 35 member = protein tuftelin-interacting protein 11, putative, expressed; E value = 0 BLAST hit in the rice genome = tuftelin-interacting protein 11, putative, expressed
Probe for Locus	HAR35_4046
Locus	POPA2_1253
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare