GrainGenes Marker Report: POPA2_1257
Locus
POPA2_1257
Type
SNP
Chromosome
3H
Chromosome Arm
3HL
Map
Barley-Core-2014_3H 69.58 Hordeum-OPA-2009-3H 78.53 Hordeum-OPA123-2008-3H 78.53 Hordeum-OPAConsensus-2011-3H 88.5
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_18237
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1257 Most representative HarvEST:Barley Assembly #32 Unigene = 7708 Most representative HarvEST:Barley Assembly #35 Unigene = 18237 HarvEST Unigene 35 Probe Set = Contig9984_at Unigene 35 Rice Locus = LOC_Os01g56100 Description for best rice BLAST hit to Unigene 35 member = BSD domain containing protein, expressed; E value = 1E-141 Marker name in barley Pilot OPA2 = 2_1257 Original SNP name = 7708-1122 Description for best rice BLAST hit to Unigene 35 member = protein BSD domain containing protein, expressed; E value = 1E-141 BLAST hit in the rice genome = BSD domain containing protein, expressed
Probe for Locus
HAR35_18237
Locus
POPA2_1257
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1257
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