Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1258

[Submit comment/correction]

Locus	POPA2_1258
Type	SNP
Synonym	Other name 11_21258 BOPA1_11_21258 BOPA1_7729-565 Synonym 11_21258
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 70.54 Hordeum-OPA123-2008-2H 70.54 Hordeum-OPAConsensus-2011-2H 80.36
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_3958 i_11_21258
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1258 Marker name in barley OPA1 = 11_21258 Original SNP name = 7729-565 Most representative HarvEST:Barley Assembly #32 Unigene = 7729 Most representative HarvEST:Barley Assembly #35 Unigene = 3958 HarvEST Unigene 35 Probe Set = Contig10027_at Unigene 35 Rice Locus = LOC_Os04g41030 Description for best rice BLAST hit to Unigene 35 member = systemin receptor SR160 precursor, putative, expressed; E value = 1E-128 Marker name in barley Pilot OPA2 = 2_1258 Description for best rice BLAST hit to Unigene 35 member = protein systemin receptor SR160 precursor, putative, expressed; E value = 1E-128 BLAST hit in the rice genome = systemin receptor SR160 precursor, putative, expressed
Probe for Locus	HAR35_3958
Locus	POPA2_1258
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare