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GrainGenes Marker Report: POPA2_1260

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Locus
POPA2_1260
Type
SNP
Synonym
Other name11_21260
BOPA1_11_21260
BOPA1_7741-527
Synonym11_21260
Chromosome
5H
Chromosome Arm
5HL
Map
Barley, 2012 9KSNP 5H46.2
Hordeum-OPA-2009-5H51.6
Hordeum-OPA123-2008-5H51.6
Hordeum-OPAConsensus-2011-5H49.16
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_18894
i_11_21260
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1260
Marker name in barley OPA1 = 11_21260
Original SNP name = 7741-527
Most representative HarvEST:Barley Assembly #32 Unigene = 7741
Most representative HarvEST:Barley Assembly #35 Unigene = 18894
HarvEST Unigene 35 Probe Set = Contig10146_at
Unigene 35 Rice Locus = LOC_Os11g01490
Description for best rice BLAST hit to Unigene 35 member = outer membrane protein, OMP85 family protein, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1260
Original SNP name = ABC08972_2_458
Description for best rice BLAST hit to Unigene 35 member = protein outer membrane protein, OMP85 family protein, expressed; E value = 0
BLAST hit in the rice genome = outer membrane protein, OMP85 family protein, expressed


Probe for Locus
HAR35_18894
Locus
POPA2_1260
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare