GrainGenes Marker Report: POPA2_1262
Locus
POPA2_1262
Type
SNP
Chromosome
7H
Chromosome Arm
7HS
Map
Barley-Core-2014_7H 6.43 Hordeum-OPA-2009-7H 6.14 Hordeum-OPA123-2008-7H 6.14 Hordeum-OPAConsensus-2011-7H 6.79
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_18770
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1262 Most representative HarvEST:Barley Assembly #32 Unigene = 7755 Most representative HarvEST:Barley Assembly #35 Unigene = 18770 HarvEST Unigene 35 Probe Set = Contig10150_at; Contig10151_s_at Unigene 35 Rice Locus = LOC_Os06g02040 Description for best rice BLAST hit to Unigene 35 member = seed maturation protein, putative, expressed; E value = 3E-22 Marker name in barley Pilot OPA2 = 2_1262 Original SNP name = 7755-570 HarvEST Unigene 35 Probe Set = Contig10150_at, Contig10151_s_at Description for best rice BLAST hit to Unigene 35 member = protein seed maturation protein, putative, expressed; E value = 3E-22 BLAST hit in the rice genome = seed maturation protein, putative, expressed
Probe for Locus
HAR35_18770
Locus
POPA1_0928 POPA2_1262
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_1262
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