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GrainGenes Marker Report: POPA2_1265

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Locus	POPA2_1265
Type	SNP
Synonym	Other name 11_21265 BOPA1_11_21265 BOPA1_7766-492 Synonym 11_21265
Chromosome	2H
Chromosome Arm	2HS
Map	Barley, 2012 9KSNP 2H 26.2 Hordeum-OPA-2009-2H 28.44 Hordeum-OPA123-2008-2H 28.44 Hordeum-OPAConsensus-2011-2H 27.5
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4459 i_11_21265
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1265 Marker name in barley OPA1 = 11_21265 Original SNP name = 7766-492 Most representative HarvEST:Barley Assembly #32 Unigene = 7766 Most representative HarvEST:Barley Assembly #35 Unigene = 4459 HarvEST Unigene 35 Probe Set = Contig10225_s_at; Contig10226_at Unigene 35 Rice Locus = LOC_Os07g49030 Description for best rice BLAST hit to Unigene 35 member = PHD-finger family protein, expressed; E value = 2E-85 Marker name in barley Pilot OPA2 = 2_1265 HarvEST Unigene 35 Probe Set = Contig10225_s_at, Contig10226_at Description for best rice BLAST hit to Unigene 35 member = protein PHD-finger family protein, expressed; E value = 2E-85 BLAST hit in the rice genome = PHD-finger family protein, expressed
Probe for Locus	HAR35_4459
Locus	POPA2_1265
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare