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GrainGenes Marker Report: POPA2_1266

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Locus	POPA2_1266
Type	SNP
Synonym	Synonym 11_21266
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 148.89 Hordeum-OPA123-2008-3H 148.89 Hordeum-OPAConsensus-2011-3H 156.42
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_3055
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1266 Marker name in barley OPA1 = 11_21266 Original SNP name = 7772-223 Most representative HarvEST:Barley Assembly #32 Unigene = 7772 Most representative HarvEST:Barley Assembly #35 Unigene = 3055 HarvEST Unigene 35 Probe Set = Contig20832_s_at Unigene 35 Rice Locus = LOC_Os01g44960 Description for best rice BLAST hit to Unigene 35 member = catalytic/ hydrolase, putative, expressed; E value = 1E-126 Marker name in barley Pilot OPA2 = 2_1266 Description for best rice BLAST hit to Unigene 35 member = protein catalytic/ hydrolase, putative, expressed; E value = 1E-126 BLAST hit in the rice genome = catalytic/ hydrolase, putative, expressed
Probe for Locus	HAR35_3055
Locus	POPA2_1266
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare