Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1270

[Submit comment/correction]

Locus	POPA2_1270
Type	SNP
Synonym	Other name 11_21270 BOPA1_11_21270 BOPA1_7810-113 Synonym 11_21270
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 62 Hordeum-OPA-2009-7H 68.46 Hordeum-OPA123-2008-7H 68.46 Hordeum-OPAConsensus-2011-7H 62.64 Hordeum-OWB-OPA2008-7H 64.14
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_17463 i_11_21270
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1270 Marker name in barley OPA1 = 11_21270 Original SNP name = 7810-113 Most representative HarvEST:Barley Assembly #32 Unigene = 7810 Most representative HarvEST:Barley Assembly #35 Unigene = 17463 HarvEST Unigene 35 Probe Set = Contig9852_at; HZ01K16u_s_at Unigene 35 Rice Locus = LOC_Os06g11490 Description for best rice BLAST hit to Unigene 35 member = blue copper protein precursor, putative, expressed; E value = 5E-68 Marker name in barley Pilot OPA2 = 2_1270 HarvEST Unigene 35 Probe Set = Contig9852_at, HZ01K16u_s_at Description for best rice BLAST hit to Unigene 35 member = protein blue copper protein precursor, putative, expressed; E value = 5E-68 BLAST hit in the rice genome = blue copper protein precursor, putative, expressed
Probe for Locus	HAR35_17463
Locus	POPA2_1270
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare