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GrainGenes Marker Report: POPA2_1282

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Locus	POPA2_1282
Type	SNP
Chromosome	2H
Chromosome Arm	2HL
Map	Barley-Core-2014_2H 84.69 Hordeum-OPA-2009-2H 79.9 Hordeum-OPA123-2008-2H 79.9 Hordeum-OPAConsensus-2011-2H 91.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_13852
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1282 Most representative HarvEST:Barley Assembly #32 Unigene = 790 Most representative HarvEST:Barley Assembly #35 Unigene = 13852 HarvEST Unigene 35 Probe Set = EBem09_SQ003_F16_s_at Unigene 35 Rice Locus = LOC_Os04g44060 Description for best rice BLAST hit to Unigene 35 member = aquaporin PIP2.3, putative, expressed; E value = 1E-149 Marker name in barley Pilot OPA2 = 2_1282 Original SNP name = 790-1211 Description for best rice BLAST hit to Unigene 35 member = protein aquaporin PIP2.3, putative, expressed; E value = 1E-149 BLAST hit in the rice genome = aquaporin PIP2.3, putative, expressed
Probe for Locus	HAR35_13852
Locus	POPA2_1282
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare