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GrainGenes Marker Report: POPA2_1289

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Locus	POPA2_1289
Type	SNP
Synonym	Synonym 11_21289
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 142.2 Hordeum-OPA123-2008-5H 142.2 Hordeum-OPAConsensus-2011-5H 136.94
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_18369
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1289 Marker name in barley OPA1 = 11_21289 Original SNP name = 7965-579 Most representative HarvEST:Barley Assembly #32 Unigene = 7965 Most representative HarvEST:Barley Assembly #35 Unigene = 18369 HarvEST Unigene 35 Probe Set = Contig10650_at; Contig10651_at; Contig10651_s_at Unigene 35 Rice Locus = LOC_Os03g55630 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 7E-59 Marker name in barley Pilot OPA2 = 2_1289 HarvEST Unigene 35 Probe Set = Contig10650_at, Contig10651_at, Contig10651_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 7E-59 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_18369
Locus	POPA2_1289
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare