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GrainGenes Marker Report: POPA2_1290

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Locus	POPA2_1290
Type	SNP
Synonym	Other name 12_21290 BOPA2_12_21290 Synonym 12_21290
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 155.8 Hordeum-OPA-2009-5H 176.62 Hordeum-OPA123-2008-5H 176.62 Hordeum-OPAConsensus-2011-5H 167.4
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_19111 i_12_21290
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1290 Marker name in barley OPA1 = 12_21290 Original SNP name = 7977-1286 Most representative HarvEST:Barley Assembly #32 Unigene = 7977 Most representative HarvEST:Barley Assembly #35 Unigene = 19111 HarvEST Unigene 35 Probe Set = Contig10517_at Unigene 35 Rice Locus = LOC_Os03g61690 Description for best rice BLAST hit to Unigene 35 member = catalytic/ protein phosphatase type 2C, putative, expressed; E value = 1E-163 Marker name in barley Pilot OPA2 = 2_1290 Marker name in barley OPA2 = 12_21290 Description for best rice BLAST hit to Unigene 35 member = protein catalytic/ protein phosphatase type 2C, putative, expressed; E value = 1E-163 BLAST hit in the rice genome = catalytic/ protein phosphatase type 2C, putative, expressed
Probe for Locus	HAR35_19111
Locus	POPA2_1290
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare