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GrainGenes Marker Report: POPA2_1297

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Locus	POPA2_1297
Type	SNP
Synonym	Other name 11_21297 BOPA1_11_21297 BOPA1_8037-282 Synonym 11_21297
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 149.64 Hordeum-OPA123-2008-5H 149.64 Hordeum-OPAConsensus-2011-5H 145.9
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4353 i_11_21297
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1297 Marker name in barley OPA1 = 11_21297 Original SNP name = 8037-282 Most representative HarvEST:Barley Assembly #32 Unigene = 8037 Most representative HarvEST:Barley Assembly #35 Unigene = 4353 HarvEST Unigene 35 Probe Set = Contig10302_at; Contig10303_s_at Unigene 35 Rice Locus = LOC_Os03g57840 Description for best rice BLAST hit to Unigene 35 member = sterol-regulatory element binding protein site 2 protease containing protein, expressed; E value = 2E-45 Marker name in barley Pilot OPA2 = 2_1297 HarvEST Unigene 35 Probe Set = Contig10302_at, Contig10303_s_at Description for best rice BLAST hit to Unigene 35 member = protein sterol-regulatory element binding protein site 2 protease containing protein, expressed; E value = 2E-45 BLAST hit in the rice genome = sterol-regulatory element binding protein site 2 protease containing protein, expressed
Probe for Locus	HAR35_4353
Locus	POPA2_1297
Synonym	Synonym CDO87
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare