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GrainGenes Marker Report: POPA2_1299

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Locus	POPA2_1299
Type	SNP
Synonym	Synonym 11_21299
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 149.36 Hordeum-OPA123-2008-2H 149.36 Hordeum-OPAConsensus-2011-2H 163.19
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_3963
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1299 Marker name in barley OPA1 = 11_21299 Original SNP name = 8053-769 Most representative HarvEST:Barley Assembly #32 Unigene = 8053 Most representative HarvEST:Barley Assembly #35 Unigene = 3963 HarvEST Unigene 35 Probe Set = Contig10580_at Unigene 35 Rice Locus = LOC_Os04g57790 Description for best rice BLAST hit to Unigene 35 member = ubiquinone biosynthesis protein COQ4, putative, expressed; E value = 1E-119 Marker name in barley Pilot OPA2 = 2_1299 Description for best rice BLAST hit to Unigene 35 member = protein ubiquinone biosynthesis protein COQ4, putative, expressed; E value = 1E-119 BLAST hit in the rice genome = ubiquinone biosynthesis protein COQ4, putative, expressed
Probe for Locus	HAR35_3963
Locus	POPA2_1299
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare