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GrainGenes Marker Report: POPA2_1308

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Locus	POPA2_1308
Type	SNP
Synonym	Synonym 11_21308
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 50.27 Hordeum-OPA123-2008-5H 50.27 Hordeum-OPAConsensus-2011-5H 41.45 Hordeum-OWB-OPA2008-5H 58.35
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_4752
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1308 Marker name in barley OPA1 = 11_21308 Original SNP name = 8201-86 Most representative HarvEST:Barley Assembly #32 Unigene = 8201 Most representative HarvEST:Barley Assembly #35 Unigene = 4752 HarvEST Unigene 35 Probe Set = Contig10652_at Unigene 35 Rice Locus = LOC_Os12g39110 Description for best rice BLAST hit to Unigene 35 member = zinc finger, C3HC4 type family protein, expressed; E value = 2E-78 Marker name in barley Pilot OPA2 = 2_1308 Original SNP name = U35_4321_768 Description for best rice BLAST hit to Unigene 35 member = protein zinc finger, C3HC4 type family protein, expressed; E value = 2E-78 BLAST hit in the rice genome = zinc finger, C3HC4 type family protein, expressed
Probe for Locus	HAR35_4752
Locus	POPA2_1308
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare