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GrainGenes Marker Report: POPA2_1320

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Locus	POPA2_1320
Type	SNP
Chromosome	6H
Chromosome Arm	6HS
Map	Barley-Core-2014_6H 54.14 Hordeum-OPA-2009-6H 45.44 Hordeum-OPA123-2008-6H 45.44 Hordeum-OPAConsensus-2011-6H 49.67
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_3834
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_1320 Most representative HarvEST:Barley Assembly #32 Unigene = 8328 Most representative HarvEST:Barley Assembly #35 Unigene = 3834 HarvEST Unigene 35 Probe Set = Contig10935_at Unigene 35 Rice Locus = LOC_Os01g25990 Description for best rice BLAST hit to Unigene 35 member = retrotransposon protein, putative, Ty1-copia subclass, expressed; E value = 1E-168 Marker name in barley Pilot OPA2 = 2_1320 Original SNP name = 8328-1201 Description for best rice BLAST hit to Unigene 35 member = protein retrotransposon protein, putative, Ty1-copia subclass, expressed; E value = 1E-168 BLAST hit in the rice genome = retrotransposon protein, putative, Ty1-copia subclass, expressed
Probe for Locus	HAR35_3834
Locus	POPA2_1320
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare