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GrainGenes Marker Report: POPA2_1321

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Locus	POPA2_1321
Type	SNP
Synonym	Other name 11_21321 BOPA1_11_21321 BOPA1_8344-444 Synonym 11_21321
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 93.9 Hordeum-OPA-2009-5H 108.18 Hordeum-OPA123-2008-5H 108.18 Hordeum-OPAConsensus-2011-5H 97.49 Hordeum-OWB-OPA2008-5H 127.094
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_3638 i_11_21321
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1321 Marker name in barley OPA1 = 11_21321 Original SNP name = 8344-444 Most representative HarvEST:Barley Assembly #32 Unigene = 8344 Most representative HarvEST:Barley Assembly #35 Unigene = 3638 HarvEST Unigene 35 Probe Set = Contig11191_at; EBem10_SQ003_G23_s_at Unigene 35 Rice Locus = LOC_Os09g34850 Marker name in barley Pilot OPA2 = 2_1321 Original SNP name = OSU_HVCBF9_907 HarvEST Unigene 35 Probe Set = Contig11191_at, EBem10_SQ003_G23_s_at Description for best rice BLAST hit to Unigene 35 member = protein delta DNA polymerase, putative, expressed; E value = 3E-56 BLAST hit in the rice genome = delta DNA polymerase, putative, expressed
Probe for Locus	HAR35_3638
Locus	POPA2_1321
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare