Query (optional)   in Class  

GrainGenes Marker Report: POPA2_1324

[Submit comment/correction]

Locus
POPA2_1324
Type
SNP
Synonym
Other name11_21324
BOPA1_11_21324
BOPA1_8377-1022
Synonym11_21324
Chromosome
5H
Chromosome Arm
5HS
Map
Hordeum-OPA-2009-5H30.99
Hordeum-OPA123-2008-5H30.99
Hordeum-OPAConsensus-2011-5H25.42
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_5168
i_11_21324
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_1324
Marker name in barley OPA1 = 11_21324
Original SNP name = 8377-1022
Most representative HarvEST:Barley Assembly #32 Unigene = 8377
Most representative HarvEST:Barley Assembly #35 Unigene = 5168
HarvEST Unigene 35 Probe Set = Contig10925_at; HVSMEi0001G22r2_s_at
Unigene 35 Rice Locus = LOC_Os11g32470
Description for best rice BLAST hit to Unigene 35 member = NEF1, putative, expressed; E value = 1E-156
Marker name in barley Pilot OPA2 = 2_1324
HarvEST Unigene 35 Probe Set = Contig10925_at, HVSMEi0001G22r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein NEF1, putative, expressed; E value = 1E-156
BLAST hit in the rice genome = NEF1, putative, expressed


Probe for Locus
HAR35_5168
Locus
POPA2_1324
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare