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GrainGenes Marker Report: POPA2_1325

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Locus
POPA2_1325
Type
SNP
Synonym
Other name11_21325
BOPA1_11_21325
BOPA1_8388-578
Synonym11_21325
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H129.41
Hordeum-OPA123-2008-5H129.41
Hordeum-OPAConsensus-2011-5H123.12
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_3035
i_11_21325
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_1325
Marker name in barley OPA1 = 11_21325
Original SNP name = 8388-578
Most representative HarvEST:Barley Assembly #32 Unigene = 8388
Most representative HarvEST:Barley Assembly #35 Unigene = 3035
HarvEST Unigene 35 Probe Set = Contig10808_at; rbaal31j11_s_at
Unigene 35 Rice Locus = LOC_Os03g43720
Description for best rice BLAST hit to Unigene 35 member = synaptic vesicle 2-related protein, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_1325
HarvEST Unigene 35 Probe Set = Contig10808_at, rbaal31j11_s_at
Description for best rice BLAST hit to Unigene 35 member = protein synaptic vesicle 2-related protein, putative, expressed; E value = 0
BLAST hit in the rice genome = synaptic vesicle 2-related protein, putative, expressed


Probe for Locus
HAR35_3035
Locus
POPA2_1325
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare