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GrainGenes Marker Report: POPA2_1328

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Locus	POPA2_1328
Type	SNP
Synonym	Other name 12_21328 BOPA2_12_21328 Synonym 12_21328
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 132.2 Hordeum-OPA-2009-7H 149.03 Hordeum-OPA123-2008-7H 149.03 Hordeum-OPAConsensus-2011-7H 151.76
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_21049 i_12_21328
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_1328 Marker name in barley OPA1 = 12_21328 Original SNP name = 8412-664 Most representative HarvEST:Barley Assembly #32 Unigene = 8412 Most representative HarvEST:Barley Assembly #35 Unigene = 21049 HarvEST Unigene 35 Probe Set = Contig10834_at; Contig10834_s_at Unigene 35 Rice Locus = LOC_Os06g50360 Description for best rice BLAST hit to Unigene 35 member = RNA binding protein, putative, expressed; E value = 1E-160 Marker name in barley Pilot OPA2 = 2_1328 Marker name in barley OPA2 = 12_21328 HarvEST Unigene 35 Probe Set = Contig10834_at, Contig10834_s_at Description for best rice BLAST hit to Unigene 35 member = protein RNA binding protein, putative, expressed; E value = 1E-160 BLAST hit in the rice genome = RNA binding protein, putative, expressed
Probe for Locus	HAR35_21049
Locus	POPA2_1328
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare