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GrainGenes Marker Report: POPA2_1332

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Locus	POPA2_1332
Type	SNP
Synonym	Other name 11_21332 BOPA1_11_21332 BOPA1_8463-466 Synonym 11_21332
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 77.31 Hordeum-OPA123-2008-4H 77.31 Hordeum-OPAConsensus-2011-4H 87.01 Hordeum-OWB-OPA2008-4H 78.775
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_18111 i_11_21332
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1332 Marker name in barley OPA1 = 11_21332 Original SNP name = 8463-466 Most representative HarvEST:Barley Assembly #32 Unigene = 8463 Most representative HarvEST:Barley Assembly #35 Unigene = 18111 HarvEST Unigene 35 Probe Set = Contig10956_at Unigene 35 Rice Locus = LOC_Os03g06090 Description for best rice BLAST hit to Unigene 35 member = nickel ion transporter, putative, expressed; E value = 1E-111 Marker name in barley Pilot OPA2 = 2_1332 Original SNP name = ABC09988_1_744 Description for best rice BLAST hit to Unigene 35 member = protein nickel ion transporter, putative, expressed; E value = 1E-111 BLAST hit in the rice genome = nickel ion transporter, putative, expressed
Probe for Locus	HAR35_18111
Locus	POPA2_1332
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare