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GrainGenes Marker Report: POPA2_1338

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Locus	POPA2_1338
Type	SNP
Synonym	Other name 11_21338 BOPA1_11_21338 BOPA1_8512-430 Synonym 11_21338
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 44.84 Hordeum-OPA123-2008-2H 44.84 Hordeum-OPAConsensus-2011-2H 45.48
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_19124 i_11_21338
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1338 Marker name in barley OPA1 = 11_21338 Original SNP name = 8512-430 Most representative HarvEST:Barley Assembly #32 Unigene = 8512 Most representative HarvEST:Barley Assembly #35 Unigene = 19124 HarvEST Unigene 35 Probe Set = Contig10745_at Unigene 35 Rice Locus = LOC_Os01g72890 Description for best rice BLAST hit to Unigene 35 member = serine/arginine repetitive matrix protein 1, putative, expressed; E value = 0.00000001 Marker name in barley Pilot OPA2 = 2_1338 Description for best rice BLAST hit to Unigene 35 member = protein serine/arginine repetitive matrix protein 1, putative, expressed; E value = 0.00000001 BLAST hit in the rice genome = serine/arginine repetitive matrix protein 1, putative, expressed
Probe for Locus	HAR35_19124
Locus	POPA2_1338
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare