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GrainGenes Marker Report: POPA2_1348

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Locus	POPA2_1348
Type	SNP
Synonym	Other name 11_21348 BOPA1_11_21348 BOPA1_861-268 Synonym 11_21348
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 87.24 Hordeum-OPA123-2008-3H 87.24 Hordeum-OPAConsensus-2011-3H 98.66
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14179 i_11_21348
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1348 Marker name in barley OPA1 = 11_21348 Original SNP name = 861-268 Most representative HarvEST:Barley Assembly #32 Unigene = 861 Most representative HarvEST:Barley Assembly #35 Unigene = 14179 HarvEST Unigene 35 Probe Set = Contig1339_at Unigene 35 Rice Locus = LOC_Os01g17190 Description for best rice BLAST hit to Unigene 35 member = calmodulin, putative, expressed; E value = 8E-76 Marker name in barley Pilot OPA2 = 2_1348 Description for best rice BLAST hit to Unigene 35 member = protein calmodulin, putative, expressed; E value = 8E-76 BLAST hit in the rice genome = calmodulin, putative, expressed
Probe for Locus	HAR35_14179
Locus	POPA2_1348 POPA1_0984
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare