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GrainGenes Marker Report: POPA2_1354

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Locus	POPA2_1354
Type	SNP
Synonym	Other name 11_21354 BOPA1_11_21354 BOPA1_8670-388 Synonym 11_21354
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 0.77 Hordeum-OPA123-2008-1H 0.77 Hordeum-OPAConsensus-2011-1H 1.68
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4527 i_11_21354
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_1354 Marker name in barley OPA1 = 11_21354 Original SNP name = 8670-388 Most representative HarvEST:Barley Assembly #32 Unigene = 8670 Most representative HarvEST:Barley Assembly #35 Unigene = 4527 HarvEST Unigene 35 Probe Set = Contig11192_at; Contig11193_s_at Unigene 35 Rice Locus = LOC_Os05g01020 Description for best rice BLAST hit to Unigene 35 member = paired amphipathic helix repeat family protein, expressed; E value = 6E-25 Marker name in barley Pilot OPA2 = 2_1354 HarvEST Unigene 35 Probe Set = Contig11192_at, Contig11193_s_at Description for best rice BLAST hit to Unigene 35 member = protein paired amphipathic helix repeat family protein, expressed; E value = 6E-25 BLAST hit in the rice genome = paired amphipathic helix repeat family protein, expressed
Probe for Locus	HAR35_4527
Locus	POPA2_1354
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare