Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_1355

[Submit comment/correction]

Locus	POPA2_1355
Type	SNP
Synonym	Other name 11_21355 BOPA1_11_21355 BOPA1_8682-406 Synonym 11_21355
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 139.4 Hordeum-OPA-2009-5H 153.51 Hordeum-OPA123-2008-5H 153.51 Hordeum-OPAConsensus-2011-5H 149.94
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_19186 i_11_21355
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_1355 Marker name in barley OPA1 = 11_21355 Original SNP name = 8682-406 Most representative HarvEST:Barley Assembly #32 Unigene = 8682 Most representative HarvEST:Barley Assembly #35 Unigene = 19186 HarvEST Unigene 35 Probe Set = Contig10798_at Unigene 35 Rice Locus = LOC_Os03g58340 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-136 Marker name in barley Pilot OPA2 = 2_1355 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-136 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_19186
Locus	POPA2_1355
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare